Projects

Open source contributions for microbiome research, bioinformatics pipelines, and AI for Science.

OhMeta Projects

metapi

Featured

A general metagenomics data mining system for robust microbiome research.

MetagenomicsSnakemake

quantpi

Featured

Microbiome profiling pipeline with comprehensive QC and statistical analysis.

MetagenomicsProfiling

rnapi

RNA-seq analysis pipeline for transcriptomics studies.

RNA-seqTranscriptomics

qiimepi

Snakemake implementation of QIIME2 for amplicon analysis.

16S/ITSQIIME2

skillpi

Knowledge base and skill management for scientific workflows.

Knowledge BaseWorkflow

clawpi

Featured

AI-powered workflow orchestration and automated scientific discovery.

AI AgentAutomation

Other Contributions

metagenome-atlas/atlas

Automated metagenome analysis pipeline — "Three commands to analyze your metagenome".

MetagenomicsAutomation

BioConda

Contributor to the bioinformatics conda channel, participating in packaging and maintenance.

CondaBioinformatics